HALOWERKTechnische Prüfungen & Formate
F TD2000 DATASTRUCTURES 02 / sam16 cigar query reference clipping coordinate projection
Project supplied SAM CIGAR operations onto reference/query intervals, clipping and skipped/deleted/insertion coordinates without returning sequences or read IDs.
POST https://detect.halowerk.com/v1/F-TD2000-DATASTRUCTURES-02/sam16-cigar-query-reference-clipping-coordinate-projectionEingaben
| Feld | Typ | Pflicht | Beschreibung |
|---|---|---|---|
| artifact | object | Ja |
Vollständiges Eingabeschema anzeigen
{
"type": "object",
"additionalProperties": false,
"required": [
"artifact"
],
"properties": {
"artifact": {
"type": "object",
"additionalProperties": false,
"required": [
"samCigar"
],
"properties": {
"samCigar": {
"type": "object",
"additionalProperties": false,
"required": [
"data",
"claim"
],
"properties": {
"data": {
"type": "object",
"additionalProperties": false,
"required": [
"pos",
"cigar",
"reverse",
"query_positions"
],
"properties": {
"pos": {
"type": "integer",
"minimum": 1,
"maximum": 1000000000
},
"cigar": {
"type": "string",
"maxLength": 5000,
"minLength": 1
},
"reverse": {
"type": "boolean"
},
"query_positions": {
"type": "array",
"items": {
"type": "integer",
"minimum": 0,
"maximum": 1000000000000
},
"minItems": 0,
"maxItems": 128
}
}
},
"claim": {
"anyOf": [
{
"type": "null"
},
{
"type": "object",
"additionalProperties": false,
"required": [
"projections",
"query_length",
"reference_end_exclusive",
"reference_start",
"spans"
],
"properties": {
"projections": {
"type": "array",
"items": {
"type": "object",
"additionalProperties": false,
"required": [
"category",
"original_query_index",
"reference_position",
"stored_query_index"
],
"properties": {
"category": {
"type": "string",
"maxLength": 20000,
"minLength": 0
},
"original_query_index": {
"type": "number"
},
"reference_position": {
"anyOf": [
{
"type": "null"
},
{
"type": "number"
}
]
},
"stored_query_index": {
"type": "number"
}
}
},
"minItems": 0,
"maxItems": 4096
},
"query_length": {
"type": "number"
},
"reference_end_exclusive": {
"type": "number"
},
"reference_start": {
"type": "number"
},
"spans": {
"type": "array",
"items": {
"type": "object",
"additionalProperties": false,
"required": [
"length",
"operation",
"query_end",
"query_start",
"reference_end",
"reference_start"
],
"properties": {
"length": {
"type": "number"
},
"operation": {
"type": "string",
"maxLength": 20000,
"minLength": 0
},
"query_end": {
"type": "number"
},
"query_start": {
"type": "number"
},
"reference_end": {
"type": "number"
},
"reference_start": {
"type": "number"
}
}
},
"minItems": 0,
"maxItems": 4096
}
}
}
]
}
}
}
}
}
}
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